Sunday, November 18, 2012

Lab Final Review

Lab 1: Scientific Method
Ø  Hypothesis
o   Null – Mountain Dew does not make children hyper
o   Alternative – Mountain Dew makes children hyper
Ø  Inductive vs. Deductive
o   Inductive – specific to general à used to devise a hypothesis
o   Deductive – general to specific à used to test a hypothesis
Lab 2: Surface / Volume Ratio
Ø  Surface area allows diffusion. Diffusion occurs across a membrane
Ø  As the surface is doubled the volume is cubed
o   This large increase in volume prohibits diffusion inside the cell
o   Why can eukaryotes be larger than prokaryotes?
Ø  Bergman – The body mass of a warm blooded animal increases in a colder climate
Ø  Allen – Warm blooded animals in colder climates have shorter limbs than the same animal in warmer climates
Lab 3: Mitosis, Chi-squared
Ø  Phases of Mitosis
o   Prophase, Metaphase, Anaphase, Telophase
o   Prophase has the longest duration of the phases in mitosis
o   Anaphase has the shortest duration of the phases in mitosis
Ø  Interphase – not a phase of mitosis
o   G1 – protein synthesis, RNA synthesis
o   S – DNA synthesis  - creates sister chromatids – this does NOT make “new” chromosomes but instead only replicates the chromosomes already present
o   G2 – protein synthesis
Ø  Cytokinesis – division of the cytoplasm, cell cleavage
Ø  Know the null hypothesis vs. the alternative hypothesis
Ø  How do you find the expected number?
Ø  Chi-squared = (observed – expected)2/expected
o   If you observed 5 different phases (prophase, metaphase, anaphase, telophase, interphase) what are your degrees of freedom?
Lab 4: Scientific Papers
Ø  Know what is included in each of the following
o   Title, abstract, introduction, materials and methods, results, discussion, and literature cited
Lab 5: Sigma Plot
Ø  Independent Variable goes on the X-axis
Ø  Dependent Variable goes on the Y-axis
Ø  Scatter Plot vs. Histogram
o   Scatter plot – is a series of marks usually connected by a line
o   Histogram – a bar graph
Ø  Figure Legend goes below the graph
Lab 6: Data Collection & t-tests
Ø  Found that natural sponges hold significantly (this is why you do a t-test) more water than synthetic sponges
Ø  Continuous vs.  Discrete data
o   Continuous – incremental data including time, weight, temperatures – use a t-test with this type of data
o   Discrete – whole numbers, counted data including population numbers, mitosis phases – use a chi-squared test for this type of data
Lab 7: DNA Isolation
Ø  Homogenization – breaks up tissue
Ø  Cell Lysis – breaks up the cell phospholipid bilayer– SDS – Lysis Buffer
Ø  Potassium acetate – contains the cell debris in one location
Ø  Centrifuge – 4000 rpm for 30 min – separates the DNA (Supernatant contains DNA) from the other cell debris (pellet containing SDS + Cell debris + potassium acetate)
Ø  Ethanol – “floats” the DNA
Lab 8: Hardy-Weinberg
Ø  Allele/genotype frequencies
o   What does p, q, p2, 2pq, q2 refer to?
§  p=the percent (in decimal form) of dominant alleles for a gene in the population
§  q=the percent of recessive alleles for a gene in the population
§  p2= the percent of the population that is homozygous dominant
§  2pq= the percent of the population that is heterozygous
§  q2= the percent of the population that is homozygous recessive
Ø  A population of cats have one gene that codes for the fur color as follows:
o   BB=Black – 36% of the population
o   Bb=Black – 48% of the population
o   bb=White – 16% of the population
o   To find the allele frequency for B - .36+.24 (this is half of the heterozygous percentage because only half the alleles are B)= .60 or 60%
o   To find the allele frequency for b - .16+.24=.40 or 40%
o   If you were only given the information that the allele frequency for b is 40% you would plug in the numbers like this:
§  p2+2pq+q2
§  every time you see p you plug in the number for the dominant allele frequency (.60, you get this because you were given the recessive frequency)
§  every time you see q you plug in the number for the recessive allele frequency (.40)
§  (.60)2 + 2(.60)(.40) + (.40)2
§  BB=(.60 x .60) 0.36
§  Bb=(2 x .60 x .40) 0.48
§  bb=(.40 x .40) 0.16
Ø  Genetic Drift
o   Founder effect – a small number of individuals from large population move to a new environment and establish themselves, this new population has less genetic diversity
o   Bottleneck effect – a large population is reduced significantly and with this new small population there is less genetic diversity
Lab 9: Evolution
Ø  What were the details of the Dover trial?
Ø  Who is Michael Behe?
Ø  Why do teachers fight against teaching Intelligent Design in the classroom?
Ø  What is Irreducible Complexity?
Ø  What is the chromosomal difference between humans and chimpanzees?
Lab 10: Bird Foraging Ecology
Ø  Niche Partitioning
Ø  You should know all the information on this lab from doing your lab report and lectures in class
Lab 11: Bioethics
Ø  Why is this important to understand for science? For society?
Lab 12: Conserving Biodiversity
Ø  Ecology – the study of the interactions between the biotic and abiotic things of a community
o   Biotic – all of the living things in a community
§  Factors affecting biotic factors
·         Competition
·         Predation
·         Symbiotic
o   Mutualism, Commensalism, Parasitism
·         Interference
o   Abiotic – the nonliving things
§  Factors affecting abiotic conditions
·         Temperature
·         Precipitation
·         Sunlight
·         Soil nutrients
·         Salinity
·         pH
·         Altitude – atmospheric pressure
·         Humidity
·         Wind Chill
Ø  Keystone species – an organisms who’s absence or presence alters dramatically the community structure
Ø  Intermediate Disturbance Hypothesis
o   Low disturbance = low diversity
o   Medium disturbance = high diversity
o   High disturbance = low diversity
Ø  Field vs. Lab studies – what are advantages and disadvantages?
Ø  Long term vs. Short term studies – what are the advantages and disadvantages?

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