Sunday, November 18, 2012

Lab Final Review

Lab 1: Scientific Method
Ø  Hypothesis
o   Null – Mountain Dew does not make children hyper
o   Alternative – Mountain Dew makes children hyper
Ø  Inductive vs. Deductive
o   Inductive – specific to general à used to devise a hypothesis
o   Deductive – general to specific à used to test a hypothesis
Lab 2: Surface / Volume Ratio
Ø  Surface area allows diffusion. Diffusion occurs across a membrane
Ø  As the surface is doubled the volume is cubed
o   This large increase in volume prohibits diffusion inside the cell
o   Why can eukaryotes be larger than prokaryotes?
Ø  Bergman – The body mass of a warm blooded animal increases in a colder climate
Ø  Allen – Warm blooded animals in colder climates have shorter limbs than the same animal in warmer climates
Lab 3: Mitosis, Chi-squared
Ø  Phases of Mitosis
o   Prophase, Metaphase, Anaphase, Telophase
o   Prophase has the longest duration of the phases in mitosis
o   Anaphase has the shortest duration of the phases in mitosis
Ø  Interphase – not a phase of mitosis
o   G1 – protein synthesis, RNA synthesis
o   S – DNA synthesis  - creates sister chromatids – this does NOT make “new” chromosomes but instead only replicates the chromosomes already present
o   G2 – protein synthesis
Ø  Cytokinesis – division of the cytoplasm, cell cleavage
Ø  Know the null hypothesis vs. the alternative hypothesis
Ø  How do you find the expected number?
Ø  Chi-squared = (observed – expected)2/expected
o   If you observed 5 different phases (prophase, metaphase, anaphase, telophase, interphase) what are your degrees of freedom?
Lab 4: Scientific Papers
Ø  Know what is included in each of the following
o   Title, abstract, introduction, materials and methods, results, discussion, and literature cited
Lab 5: Sigma Plot
Ø  Independent Variable goes on the X-axis
Ø  Dependent Variable goes on the Y-axis
Ø  Scatter Plot vs. Histogram
o   Scatter plot – is a series of marks usually connected by a line
o   Histogram – a bar graph
Ø  Figure Legend goes below the graph
Lab 6: Data Collection & t-tests
Ø  Found that natural sponges hold significantly (this is why you do a t-test) more water than synthetic sponges
Ø  Continuous vs.  Discrete data
o   Continuous – incremental data including time, weight, temperatures – use a t-test with this type of data
o   Discrete – whole numbers, counted data including population numbers, mitosis phases – use a chi-squared test for this type of data
Lab 7: DNA Isolation
Ø  Homogenization – breaks up tissue
Ø  Cell Lysis – breaks up the cell phospholipid bilayer– SDS – Lysis Buffer
Ø  Potassium acetate – contains the cell debris in one location
Ø  Centrifuge – 4000 rpm for 30 min – separates the DNA (Supernatant contains DNA) from the other cell debris (pellet containing SDS + Cell debris + potassium acetate)
Ø  Ethanol – “floats” the DNA
Lab 8: Hardy-Weinberg
Ø  Allele/genotype frequencies
o   What does p, q, p2, 2pq, q2 refer to?
§  p=the percent (in decimal form) of dominant alleles for a gene in the population
§  q=the percent of recessive alleles for a gene in the population
§  p2= the percent of the population that is homozygous dominant
§  2pq= the percent of the population that is heterozygous
§  q2= the percent of the population that is homozygous recessive
Ø  A population of cats have one gene that codes for the fur color as follows:
o   BB=Black – 36% of the population
o   Bb=Black – 48% of the population
o   bb=White – 16% of the population
o   To find the allele frequency for B - .36+.24 (this is half of the heterozygous percentage because only half the alleles are B)= .60 or 60%
o   To find the allele frequency for b - .16+.24=.40 or 40%
o   If you were only given the information that the allele frequency for b is 40% you would plug in the numbers like this:
§  p2+2pq+q2
§  every time you see p you plug in the number for the dominant allele frequency (.60, you get this because you were given the recessive frequency)
§  every time you see q you plug in the number for the recessive allele frequency (.40)
§  (.60)2 + 2(.60)(.40) + (.40)2
§  BB=(.60 x .60) 0.36
§  Bb=(2 x .60 x .40) 0.48
§  bb=(.40 x .40) 0.16
Ø  Genetic Drift
o   Founder effect – a small number of individuals from large population move to a new environment and establish themselves, this new population has less genetic diversity
o   Bottleneck effect – a large population is reduced significantly and with this new small population there is less genetic diversity
Lab 9: Evolution
Ø  What were the details of the Dover trial?
Ø  Who is Michael Behe?
Ø  Why do teachers fight against teaching Intelligent Design in the classroom?
Ø  What is Irreducible Complexity?
Ø  What is the chromosomal difference between humans and chimpanzees?
Lab 10: Bird Foraging Ecology
Ø  Niche Partitioning
Ø  You should know all the information on this lab from doing your lab report and lectures in class
Lab 11: Bioethics
Ø  Why is this important to understand for science? For society?
Lab 12: Conserving Biodiversity
Ø  Ecology – the study of the interactions between the biotic and abiotic things of a community
o   Biotic – all of the living things in a community
§  Factors affecting biotic factors
·         Competition
·         Predation
·         Symbiotic
o   Mutualism, Commensalism, Parasitism
·         Interference
o   Abiotic – the nonliving things
§  Factors affecting abiotic conditions
·         Temperature
·         Precipitation
·         Sunlight
·         Soil nutrients
·         Salinity
·         pH
·         Altitude – atmospheric pressure
·         Humidity
·         Wind Chill
Ø  Keystone species – an organisms who’s absence or presence alters dramatically the community structure
Ø  Intermediate Disturbance Hypothesis
o   Low disturbance = low diversity
o   Medium disturbance = high diversity
o   High disturbance = low diversity
Ø  Field vs. Lab studies – what are advantages and disadvantages?
Ø  Long term vs. Short term studies – what are the advantages and disadvantages?

Thursday, November 15, 2012

Quiz 4 Review

Quiz 4 Review
Foundational Principles of Evolution:
1.       Animal types exist & fill niches
2.       Animal types form populations
3.       Populations are composed of unique individuals
4.       Individuals are not equally successful or favored
Principles of Evolution proposed by Darwin and Wallace:
5.       Success or superiority is context specific
6.       Overpopulation occurs and creates intrapopulation (intraspecific) competition
7.       Competition causes “favored” or “superior” individuals to survive and reproduce more often
8.       Successful “favored” traits become prevalent in future generations
a.       Conclusion: level of selection pressure and generation time determines the rate of change
Principles of Evolution that support ideas proposed by Darwin and Wallace:
9.       Traits are passed through gametes
10.   Gametes contain instructions for inheritance written in nucleotide polymers
11.   Nucleotide polymers in Eukaryotic DNA are organized into chromosomes
12.   Chromosome genes (segments) code for heritable traits
13.   Traits have multiple alleles for associated genes
a.       Traits with individual diversity have allelic diversity (individual diversity = allelic diversity)
14.   Allelic frequencies can change over time
 
Questions:
Ø  What is the difference between a genotype and a phenotype?
o   What is in the genotype but not in the phenotype?
o   What is in the phenotype but not in the genotype?
Ø  What is another name for gene pool? Why?
Ø  What are the 5 aspects of phenotype?
Ø  Can you think of ways to test each of the 14 principles of evolution?
Ø  What traits are “favored” in your favorite animal?
o   Would these traits change if the conditions changed?
Ø  How many alleles are associated with each gene on a chromosome?
Ø  How many alleles do you have for a gene? (think about homologous chromosomes here)
Ø  Why is it important to understand crossing over and random assortment for evolution?
Ø  What did August Weismann believe about fossils?
Ø  What is the genotype for a person that is a carrier? (heterozygous or homozygous)
Ø  What are acquired characteristics?
Ø  Is blending a dominant recessive relationship?
Ø  Who worked on building a model for DNA
Ø  What does it mean to say “Chromosomes are duplicated in normal individuals”
o   Does this have anything to do with sister chromatids?
Ø  What is an example of high selection pressure?
Ø  What is an example of short generation time?
 
Vocabulary: know and understand the definition for each of the following
  • Chromosome
  • Gene
  • Locus
  • Allele
  • Gamete
  • Homozygous
  • Heterozygous
  • Purifying Selection
  • Genotype
  • Phenotype
  • Carrier
  • Homologous Pair

Friday, November 9, 2012

Quiz 3 Review


Foundational Principles of Evolution:

1.      There are different “types” of animals
2.      Animal “types” form unique populations


3.      Population members have individuality
a.        
4.      Individual characteristics are not equally successful or favored
a.        
Principles proposed by Darwin and Wallace:
 
5.      Success or superiority is context specific


6.      Overpopulation occurs and creates intrapopulation competition
a.       Competition –
b.      Competitive interactions -
c.       Competitive Exclusion – one population usurps all available resources
                                                               i.      No competitive exclusion
1.       
2.       
3.       
a.        
b.       
c.        
d.        
d.       Carrying Capacity –
                                                               i.      Struggle for Existence, Law of the Minimum
e.       Character displacement vs. Character release
7.      Competition causes “inferior” individuals to procreate less successfully
a.       Intrapopulation competition “selects” for beneficial (superior) traits
8.      Successful “favored” traits become prevalent in future generations


People:

·         Justus von Liebig
·         Darwin
·         Lewis & Clark
·         Lamark
·         Thomas Malthus
·         Wallace
·         Thomas Jefferson
·         Gause
·         Plato
 
·         Traveled on the Beagle, hypothesized at home
·         Collected & sold organisms, did field work
·         Collected fossils, sent explorers to find mammoth
·         Sent on an expedition to discover new animals
·         Believed fossils were extinct animals
·         Organisms have true “essence”
·         Showed competitive exclusion with bacteria
·         Economist that studied limitations on carrying capacity “struggle for existence”
·         Developed the law of the minimum